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    Home » Recipes » Breakfast

    Gluten Free Zucchini Muffins

    Modified: Jul 31, 2025 · Published: Mar 31, 2023 by Nicole Kendrick · This post may contain affiliate links.

    Jump to Recipe Print Recipe

    These gluten free zucchini muffins will satisfy your sweet tooth in a healthy way. Made with no gluten and loaded with zucchini, these muffins are moist, tender, and have a wonderful texture with a tasty pop of chocolate in every bite!

    Three chocolate chip zucchini muffins in paper liners.

    Mom always said, "Eat your veggies!" Of course, when you have kids, that's easier said than done. One easy way to get more veggies into your kids (and yourself) is to add zucchini to recipes, like these chocolate grain free zucchini muffins.

    Adding zucchini not only adds veggie goodness, but it also adds moisture, which makes baked goods softer, more tender, and moist. It's a win all the way around!

    I love to pair delicious, healthy gluten free muffins like these with my vanilla peanut butter smoothie or antioxidant breakfast smoothie for a sweet, good-for-you start to the day, which is why I've created another tasty, better-for-you muffin option.

    These gluten free chocolate chip zucchini muffins are so soft and tender, and everyone always enjoys them, especially the kids. The best part is that they're so much better for you than traditional muffins, but you can't tell the difference.

    They're perfect for breakfast, brunch, an afternoon snack, or any time you want a tasty treat that you can feel good about.

    Why You'll Love This Recipe

    • Basic Ingredients: This recipe requires only a few simple ingredients found in your kitchen or local grocery store.
    • Easy: This is an easy zucchini muffins recipe. All you have to do is mix, pour, and bake!
    • Moist and Tender: The addition of zucchini makes these muffins so moist and tender.
    • Delicious Flavor: The combination of peanut butter, chocolate chips, and cinnamon creates a muffin with a classic, delicious flavor everyone loves.
    • Better for You: These muffins are gluten free and naturally sweetened with maple syrup and coconut sugar, so they're a healthier option you can feel good about.
    • Great for Most Diets: These muffins are gluten and dairy free and naturally sweetened, making them ideal for a variety of diets.
    • Versatile: These muffins make the perfect breakfast, brunch, afternoon snack, or dessert.
    • Great for Meal Prep: These are freezer-friendly, so you can make extra and store them for future use.
    Jump to:
    • Why You'll Love This Recipe
    • Ingredients
    • Variations
    • How to Make Gluten Free Zucchini Muffins
    • Expert Tips
    • Gluten Free Zucchini Muffins FAQ
    • More Delicious Muffin Recipes
    • 📖 Recipe
    • 💬 Comments

    Ingredients

    Individual zucchini muffin ingredients in bowls.

    See the recipe card at the end of the post for a full list of ingredients and their exact amounts.

    Variations

    • Zucchini: Use an equal amount of sweet potatoes in place of zucchini for sweet potato chocolate muffins.
    • Add Crunch: Use chunky peanut butter to add a little crunch to your muffins.
    • Add Nuts: Speaking of adding crunch, try adding your favorite chopped nuts for more flavor and texture.
    • Traditional: You can use all purpose flour instead of gluten free flour in equal amounts if you don't have gluten issues.
    • Chocolate Chips: Milk, semi-sweet, and dark chocolate chips all work well in this zucchini muffin recipe. Use your favorite!
    • Zucchini Bread: Add the batter to a greased loaf pan and bake at 350°F for 50 to 60 minutes to make gluten free zucchini bread.

    How to Make Gluten Free Zucchini Muffins

    Whisked peanut butter and sugar in a glass bowl.

    Step 1: Whisk the dry ingredients in a small bowl. Then, whisk the peanut butter, maple syrup, and coconut sugar in a large bowl.

    Whisked wet muffin ingredients in glass bowl.

    Step 2: Whisk the eggs and vanilla into the peanut butter mixture.

    Zucchini muffin batter in a glass bowl.

    Step 3: Mix in the zucchini, followed by the dry ingredients. Then, fold in the chocolate chips.

    Zucchini muffins in lines on a baking sheet.

    Step 4: Fill lined muffin pan wells to the top with the batter and bake at 350°F until a toothpick inserted into the center comes out clean.

    Expert Tips

    • Measure your flour by weight, if possible. In lieu of that, loosely spoon your flour into your measuring cup and level it off with a knife to avoid compacting.
    • Mix your wet and dry ingredients until just combined. Overmixing will make tough muffins.
    • To avoid soggy muffins, place your shredded zucchini between two layers of paper towels in a strainer. Then, press the zucchini down firmly to remove as much excess moisture as possible.
    • For the best crown, let your batter rest for about 10 minutes before baking.
    • Be sure your baking powder is fresh. Your muffins will not rise if your baking powder is outdated.
    • Tulip cupcake liners make it so easy to remove your muffins from the muffin pan.

    Gluten Free Zucchini Muffins FAQ

    What is the best gluten free flour blend to use for zucchini muffins?

    The top choices for gluten free muffins of any kind are King Arthur gluten-Free Measure-For-Measure Flour and Bob's Red Mill Gluten-Free 1:1 Baking Flour. Both make it easy and convenient to make gluten-free baked goods with the perfect texture.

    Why are my zucchini muffins soggy?

    Zucchini muffins are most commonly soggy due to excess moisture from the zucchini. To avoid soggy muffins, be sure to thoroughly press as much excess moisture out of the zucchini as possible.

    Why do you add zucchini to muffins?

    Much like bananas or applesauce, zucchini adds moisture and texture to baked goods like muffins and quickbreads.

    Three zucchini muffins next to a bowl of chocolate chips.

    More Delicious Muffin Recipes

    • Blueberry muffs in muffin tin.
      Blueberry Gluten Free Muffins Recipe
    • Three blackberry oatmeal muffins stacked atop one another.
      Blackberry Oatmeal Muffins
    • Chcolate muffin with chocolate chips on the top
      Vegan Gluten Free Chocolate Chip Muffins
    • Closeup shot of a plate with a pumpkin oat bite.
      Pumpkin Baked Oats - Muffin-Style

    ★ Did you make this recipe? Don’t forget to give it a star rating below! I would love to hear back from you! You can also FOLLOW ME on  Instagram, Pinterest, Tiktok, and Facebook for more delicious recipes!

    📖 Recipe

    A chocolate chip zucchini muffin in a paper liner.

    Gluten Free Zucchini Muffins

    These gluten free zucchini muffins will satisfy your sweet tooth in a healthy way. Made with no gluten and loaded with zucchini, these muffins are moist, tender, and have a wonderful texture with a tasty pop of chocolate in every bite!
    5 from 50 votes
    Nicole Kendrick
    Print Recipe Pin Recipe

    Video

    Prep Time 10 minutes mins
    Cook Time 26 minutes mins
    0 minutes mins
    Total Time 36 minutes mins
    Course Breakfast, Dessert, Snack
    Cuisine American
    Servings 12
    Calories 204 kcal

    Equipment

    • Muffin pan
    • Measuring cups
    • Measuring spoons
    • Tulip baking liners

    Ingredients
      

    • 1 cup gluten free 1:1 flour
    • 1 ½ teaspoon baking powder
    • ½ teaspoon salt
    • ½ teaspoon cinnamon
    • ½ cup chocolate chips
    • 1 cup shredded zucchini drained
    • ¾ cup peanut butter
    • ¼ maple syrup
    • 2 large eggs
    • ½ cup coconut sugar
    • ¾ teaspoon vanilla extract

    Instructions
     

    • First, preheat the oven to 350°F. Then, line a muffin pan with 12 liners.
    • Next, in a small bowl, whisk together the flour, cinnamon, baking powder, and salt.
    • Meanwhile, in a large bowl, whisk the peanut butter, maple syrup and coconut sugar together until well combined. Next, add eggs and vanilla, then whisk again. Afterwards, add the zucchini
    • After, pour the dry ingredients into the wet ingredients, and use a rubber spatula to mix until well combined. Finally, fold in the chocolate chips.
    • Then, scoop the batter into liners and fill to the top. Lastly, add more chocolate chips to the tops of muffins, if desired.
    • Finally, bake for 24 - 27 minutes until a toothpick comes out clean.

    Notes

    Storage
    • Store at room temperature for up to 4 days in an airtight container. 
    • Wrap individual muffins in plastic wrap and freeze them for up to 3 months in an airtight, freezer-safe container or heavy-duty freezer bag. 
    • Bring to room temperature before serving. 
    Tips
    • Measure your flour by weight, if possible. In lieu of that, loosely spoon your flour into your measuring cup and level it off with a knife to avoid compacting.
    • Mix your wet and dry ingredients until just combined. Overmixing will make tough muffins.
    • To avoid soggy muffins, place your shredded zucchini between two layers of paper towels in a strainer. Then, press the zucchini down firmly to remove as much excess moisture as possible.
    • For the best crown, let your batter rest for about 10 minutes before baking.
    • Be sure your baking powder is fresh. Your muffins will not rise if your baking powder is outdated.
    • Tulip cupcake liners make it so easy to remove your muffins from the muffin pan.

    Nutrition

    Serving: 1muffinCalories: 204kcalCarbohydrates: 22gProtein: 6gFat: 12gSaturated Fat: 3gPolyunsaturated Fat: 2gMonounsaturated Fat: 4gTrans Fat: 0.003gCholesterol: 31mgSodium: 245mgPotassium: 152mgFiber: 2gSugar: 11gVitamin A: 66IUVitamin C: 2mgCalcium: 57mgIron: 1mg
    Tried this recipe?Let us know how it was!

    More Gluten-Free Breakfast Recipes

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      Tater Tot Cups with Chicken and Bacon
    • Four pumpkin bread slices on a white plate.
      Gluten Free Pumpkin Loaf
    • A white plate filled with godlen chicken breakfast sausage.
      Chicken Breakfast Sausage
    • A blueberry lemon muffin on a wooden board.
      Blueberry Lemon Gluten Free Muffins

    Comments

      5 from 50 votes (37 ratings without comment)

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      Recipe Rating




    1. Jacqueline says

      October 20, 2025 at 11:45 am

      5 stars
      Great gluten free muffins. I love the combo of zucchini. peanut butter and chocolate!

      Reply
      • Nicole Kendrick says

        December 07, 2025 at 8:14 pm

        So glad you enjoyed them!

        Reply
    2. Leah says

      October 19, 2025 at 5:00 pm

      5 stars
      These muffins are so good! I love the hidden veggies.

      Reply
    3. Ashley says

      October 19, 2025 at 11:03 am

      5 stars
      My family loved these! I great way to sneak in zucchini too!

      Reply
      • Nicole Kendrick says

        November 11, 2025 at 11:02 am

        So healthy and so yummy! I love helping feed the family. Thanks, Ashley!

        Reply
    4. Krystle says

      October 18, 2025 at 8:55 pm

      5 stars
      Peanut butter and chocolate are perfect in these! Such a fun way to use up the harvest from my garden

      Reply
    5. Jaleah says

      August 19, 2025 at 11:57 am

      5 stars
      These muffins are one of my favorite recipes! They are the perfect breakfast or little treat.

      Reply
    6. Swathi says

      August 19, 2025 at 6:33 am

      5 stars
      Great gluten free chocolate chip zucchini muffins so perfect and easy to make it, I enjoyed making it.

      Reply
    7. Sonja says

      August 19, 2025 at 1:55 am

      5 stars
      I adore desserts/breakfast with hidden veggies! These Zucchini muffins are so good. Just the right amount of sweetness, super moist and have me feel good about eating dessert for breakfast! Shared them with a friend who has celiac and she wanted the recipe too.

      Reply
    8. Claudia says

      August 18, 2025 at 12:08 pm

      5 stars
      Just baked these Gluten Free Zucchini Muffins—soft, moist, and perfect with a cup of coffee 🧁🥒✨

      Reply
    9. Liz says

      August 18, 2025 at 7:30 am

      5 stars
      My family loved these muffins! They disappeared quickly!!!

      Reply
    10. nancy wu says

      April 06, 2023 at 7:29 pm

      5 stars
      wow these Chocolate Chip Zucchini Muffins are so satisfying and easy to make. Everyone loves them!

      Reply
      • NKendrick says

        April 07, 2023 at 3:49 pm

        Thank you, Nancy. I am so happy to hear they were a hit!

        Reply
    11. Stephanie says

      April 06, 2023 at 6:39 am

      5 stars
      These chocolate chip zucchini muffins are to die for! I would not have thought to pair zucchini and chocolate - but it works perfectly. My gluten-free friends agreed!

      Reply
      • NKendrick says

        April 06, 2023 at 5:14 pm

        Stephanie, thank you so much for sharing your feedback! I’m glad you and your friends enjoyed them!

        Reply
    12. Natalie Perry says

      April 05, 2023 at 11:07 pm

      5 stars
      My kids are going to love this. I am always in the lookout for ways to sneak in some nutrition, hidden with chocolate? Bonus points! Lol

      Reply
      • NKendrick says

        April 06, 2023 at 5:15 pm

        Any way to get those veggies in, right?!

        Reply
    13. `Tyanne says

      April 05, 2023 at 10:38 pm

      5 stars
      Great way to use zucchini!

      Reply

    Hello! I’m Nicole Kendrick, the creator of Golden Grace Kitchen, a holistic nutritionist, and a certified health coach. I was diagnosed with Celiac Disease in 2013, which means every recipe you find here will always be gluten-free.

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